If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ), 'gf_id' => 'HOM05D000738', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000738' ), 'data_identifier' => 'HOM05D000738', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000738', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '792', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p33930' => 'bna', 'A02p38450' => 'bna', 'A03p33840' => 'bna', 'A05p27860' => 'bna', 'A05p42770' => 'bna', 'A06p22110' => 'bna', 'A06p37870' => 'bna', 'Aa31LG10G17140' => 'aar', 'Aa31LG2G12280' => 'aar', 'Aa31LG3G6440' => 'aar', 'Aa31LG4G13730' => 'aar', 'Aa31LG5G15200' => 'aar', 'Aa31LG8G7680' => 'aar', 'Aa31sc1453G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1912' => 'aag', 'Actinidia06887' => 'ach', 'Actinidia07273' => 'ach', 'Actinidia09363' => 'ach', 'Actinidia16311' => 'ach', 'Actinidia20287' => 'ach', 'Actinidia21139' => 'ach', 'Actinidia24779' => 'ach', 'Actinidia24920' => 'ach', 'Actinidia33533' => 'ach', 'Ah.06g193640' => 'amhyb', 'Ah.06g193650' => 'amhyb', 'Ah.11g050300' => 'amhyb', 'Ah.12g061780' => 'amhyb', 'Ah.15g100070' => 'amhyb', 'AL1G64920' => 'aly', 'AL3G14970' => 'aly', 'AL3G23870' => 'aly', 'AL3G34800' => 'aly', 'AL5G22270' => 'aly', 'AL5G46140' => 'aly', 'AL6G40490' => 'aly', 'Aqoxy1G00216' => 'aox', 'Aqoxy1G00674' => 'aox', 'Aqoxy5G00417' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35SR7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QQJ98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9NFN0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFQ1HQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVL0TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F3KKM7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3V4L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G76R0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUK1DM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0T4Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K537LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0C43K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LCP7TV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MK7QVR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MVRX4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAJ8MZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH8WCF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS3BV2' => 'arhy', 'AT1G54510' => 'ath', 'AT3G04810' => 'ath', 'AT3G12200' => 'ath', 'AT3G20860' => 'ath', 'AT3G44200' => 'ath', 'AT3G63280' => 'ath', 'AT5G28290' => 'ath', 'ATR0605G360' => 'atr', 'ATR0665G218' => 'atr', 'ATR0743G127' => 'atr', 'ATR0772G156' => 'atr', 'Atru.chr1.971' => 'acertr', 'Atru.chr1.999' => 'acertr', 'Atru.chr2.788' => 'acertr', 'Atru.chr3.2596' => 'acertr', 'Atru.chr3.3132' => 'acertr', 'Atru.chr5.1502' => 'acertr', 'AUR62000097' => 'cqu', 'AUR62001028' => 'cqu', 'AUR62001544' => 'cqu', 'AUR62004924' => 'cqu', 'AUR62011983' => 'cqu', 'AUR62019271' => 'cqu', 'AUR62020239' => 'cqu', 'AUR62024385' => 'cqu', 'AUR62025969' => 'cqu', 'AUR62032295' => 'cqu', 'BcaB01g01189' => 'bca', 'BcaB02g08070' => 'bca', 'BcaB04g19299' => 'bca', 'BcaB04g21090' => 'bca', 'BcaB07g34184' => 'bca', 'BcaC01g02021' => 'bca', 'BcaC01g02022' => 'bca', 'BcaC01g04348' => 'bca', 'BcaC01g04349' => 'bca', 'BcaC03g17763' => 'bca', 'BcaC05g28198' => 'bca', 'BcaC09g48223' => 'bca', 'BcaNung01732' => 'bca', 'BcaNung02089' => 'bca', 'BolC1t04296H' => 'bol', 'BolC1t05256H' => 'bol', 'BolC2t11849H' => 'bol', 'BolC3t16403H' => 'bol', 'BolC3t19202H' => 'bol', 'BolC5t33050H' => 'bol', 'BolC5t34223H' => 'bol', 'BolC5t34902H' => 'bol', 'BolC7t44571H' => 'bol', 'BraA01t03501Z' => 'bra', 'BraA02t08823Z' => 'bra', 'BraA03t12558Z' => 'bra', 'BraA05t21673Z' => 'bra', 'BraA05t22976Z' => 'bra', 'BraA06t25302Z' => 'bra', 'BraA06t26705Z' => 'bra', 'C01p43330' => 'bna', 'C01p53110' => 'bna', 'C02p57770' => 'bna', 'C03p41150' => 'bna', 'C03p69430' => 'bna', 'C04p29940' => 'bna', 'C05p43200' => 'bna', 'C05p55560' => 'bna', 'C05p62490' => 'bna', 'C07p40370' => 'bna', 'CAN.G1144.8' => 'can', 'CAN.G115.7' => 'can', 'CAN.G128.27' => 'can', 'CAN.G134.112' => 'can', 'CAN.G1556.2' => 'can', 'CAN.G1665.1' => 'can', 'CAN.G222.95' => 'can', 'CAN.G226.25' => 'can', 'CAN.G433.13' => 'can', 'CAN.G689.11' => 'can', 'CANSAT11G1117' => 'cansat', 'CANSAT25G3795' => 'cansat', 'CANSAT54G0608' => 'cansat', 'CANSAT54G3039' => 'cansat', 'CANSAT80G0761' => 'cansat', 'CARHR079060' => 'chi', 'CARHR086770' => 'chi', 'CARHR096730' => 'chi', 'CARHR152690' => 'chi', 'CARHR185090' => 'chi', 'CARHR215410' => 'chi', 'CARHR215420' => 'chi', 'CARHR291670' => 'chi', 'Carub.0002s0933' => 'cru', 'Carub.0003s0399' => 'cru', 'Carub.0003s1157' => 'cru', 'Carub.0003s2083' => 'cru', 'Carub.0005s0995' => 'cru', 'Carub.0006s2569' => 'cru', 'Ca_01638_v3' => 'car', 'Ca_02490_v3' => 'car', 'Ca_08486_v3' => 'car', 'Ca_08631_v3' => 'car', 'Ca_09735_v3' => 'car', 'Ca_10050_v3' => 'car', 'Ca_10138_v3' => 'car', 'Ca_14006_v3' => 'car', 'Ca_19464_v3' => 'car', 'CBR_g20129' => 'cbr', 'CBR_g27740' => 'cbr', 'Cc01_g04480' => 'ccan', 'Cc01_g08550' => 'ccan', 'Cc01_g19120' => 'ccan', 'Cc02_g31860' => 'ccan', 'Cc06_g16510' => 'ccan', 'Cc08_g07350' => 'ccan', 'CDE02G0334' => 'cde', 'CDE02G2882' => 'cde', 'CDE02G3446' => 'cde', 'CDE05G1553' => 'cde', 'CDE06G1213' => 'cde', 'CDE07G0607' => 'cde', 'CDE08G1479' => 'cde', 'Cfa006183' => 'cfa', 'Cfa006450' => 'cfa', 'Cfa009736' => 'cfa', 'Cfa009737' => 'cfa', 'Cfa009738' => 'cfa', 'Cfa009945' => 'cfa', 'Cfa016872' => 'cfa', 'Ciclev10000599m.g' => 'ccl', 'Ciclev10004527m.g' => 'ccl', 'Ciclev10015011m.g' => 'ccl', 'Ciclev10019351m.g' => 'ccl', 'Ciclev10027754m.g' => 'ccl', 'CiPaw.07G065100' => 'cil', 'CiPaw.07G088200' => 'cil', 'CiPaw.08G108600' => 'cil', 'CiPaw.08G125000' => 'cil', 'CiPaw.09G034300' => 'cil', 'CiPaw.10G030500' => 'cil', 'CiPaw.13G130900' => 'cil', 'CiPaw.13G163400' => 'cil', 'CiPaw.14G095300' => 'cil', 'ClCG02G016490' => 'cla', 'ClCG02G022420' => 'cla', 'ClCG04G000580' => 'cla', 'ClCG09G007360' => 'cla', 'COL.COLO4_07956' => 'col', 'COL.COLO4_09050' => 'col', 'COL.COLO4_15301' => 'col', 'COL.COLO4_24847' => 'col', 'COL.COLO4_28710' => 'col', 'Cpa.g.sc117.74' => 'cpa', 'Cpa.g.sc52.109' => 'cpa', 'Cpa.g.sc754.4' => 'cpa', 'Cpa.g.sc84.79' => 'cpa', 'Cpa.g.sc85.129' => 'cpa', 'Cpa.g.sc92.3' => 'cpa', 'Cre01.g001800' => 'cre', 'Cre02.g075350' => 'cre', 'Cre02.g107800' => 'cre', 'Cre04.g226200' => 'cre', 'Cre05.g232750' => 'cre', 'Cre06.g268150' => 'cre', 'Cre07.g328850' => 'cre', 'Cre07.g339100' => 'cre', 'Cre07.g351150' => 'cre', 'Cre10.g443300' => 'cre', 'Cre12.g499850' => 'cre', 'Cre12.g514650' => 'cre', 'Cre12.g560350' => 'cre', 'Cre13.g567550' => 'cre', 'Cre17.g747397' => 'cre', 'CsaV3_2G004270' => 'csa', 'CsaV3_4G031440' => 'csa', 'CsaV3_6G038550' => 'csa', 'CsaV3_7G027840' => 'csa', 'CSS0003940' => 'camsi', 'CSS0017972' => 'camsi', 'CSS0018113' => 'camsi', 'CSS0020398' => 'camsi', 'CSS0024240' => 'camsi', 'CSS0024287' => 'camsi', 'CSS0025677' => 'camsi', 'CSS0026814' => 'camsi', 'CSS0032022' => 'camsi', 'CSS0032099' => 'camsi', 'CSS0033741' => 'camsi', 'CSS0035684' => 'camsi', 'CSS0039295' => 'camsi', 'CSS0043859' => 'camsi', 'CSS0046029' => 'camsi', 'DCAR_002057' => 'dca', 'DCAR_002058' => 'dca', 'DCAR_006619' => 'dca', 'DCAR_012233' => 'dca', 'DCAR_012234' => 'dca', 'DCAR_012501' => 'dca', 'DCAR_013574' => 'dca', 'DCAR_017001' => 'dca', 'Dinv02203' => 'din', 'Dinv03304' => 'din', 'Dinv03305' => 'din', 'Dinv08034' => 'din', 'Dinv08140' => 'din', 'Dinv17091' => 'din', 'Dinv17779' => 'din', 'Dinv18092' => 'din', 'Dinv24118' => 'din', 'Dinv32894' => 'din', 'Dinv32895' => 'din', 'Duzib093G0290' => 'dzi', 'Duzib106G0908' => 'dzi', 'Duzib106G1391' => 'dzi', 'Duzib128G0517' => 'dzi', 'Duzib133G0772' => 'dzi', 'Duzib138G1319' => 'dzi', 'Duzib150G0736' => 'dzi', 'Duzib168G0420' => 'dzi', 'Duzib168G2329' => 'dzi', 'Duzib170G0217' => 'dzi', 'Duzib177G0510' => 'dzi', 'ECA233G5570' => 'eca', 'ECA236G4177' => 'eca', 'ECA238G4259' => 'eca', 'ECA248G0255' => 'eca', 'ECA248G3361' => 'eca', 'EL10Ac3g06992' => 'bvu', 'EL10Ac4g09111' => 'bvu', 'EL10Ac4g10298' => 'bvu', 'EL10Ac5g10509' => 'bvu', 'EL10Ac7g16312' => 'bvu', 'Eucgr.A02404' => 'egr', 'Eucgr.B03821' => 'egr', 'Eucgr.D00796' => 'egr', 'Eucgr.D00920' => 'egr', 'Eucgr.H04382' => 'egr', 'Eucgr.K03338' => 'egr', 'FAN02G3006' => 'fan', 'FAN05G0257' => 'fan', 'FAN05G2879' => 'fan', 'FAN05G4282' => 'fan', 'FAN05G5660' => 'fan', 'FAN09G1318' => 'fan', 'FAN09G3546' => 'fan', 'FAN09G4489' => 'fan', 'FAN11G3260' => 'fan', 'FAN14G1150' => 'fan', 'FAN14G2261' => 'fan', 'FAN14G5456' => 'fan', 'FAN15G3094' => 'fan', 'FAN16G3682' => 'fan', 'FAN21G2600' => 'fan', 'FAN24G1379' => 'fan', 'FAN25G0274' => 'fan', 'FAN27G1443' => 'fan', 'FAN27G2683' => 'fan', 'FvH4_2g23090' => 'fve', 'FvH4_3g26671' => 'fve', 'FvH4_6g03290' => 'fve', 'FvH4_6g03300' => 'fve', 'FvH4_6g23080' => 'fve', 'Glyma.02G145000' => 'gma', 'Glyma.02G177900' => 'gma', 'Glyma.02G180100' => 'gma', 'Glyma.03G140100' => 'gma', 'Glyma.03G156800' => 'gma', 'Glyma.03G246100' => 'gma', 'Glyma.10G029000' => 'gma', 'Glyma.10G094500' => 'gma', 'Glyma.10G161400' => 'gma', 'Glyma.11G179600' => 'gma', 'Glyma.12G093800' => 'gma', 'Glyma.12G187700' => 'gma', 'Glyma.13G313500' => 'gma', 'Glyma.19G143000' => 'gma', 'Glyma.19G159100' => 'gma', 'Glyma.19G243600' => 'gma', 'Glyma.20G224100' => 'gma', 'Gohir.A01G195600' => 'ghi', 'Gohir.A05G078300' => 'ghi', 'Gohir.A07G112900' => 'ghi', 'Gohir.A08G013100' => 'ghi', 'Gohir.A08G064700' => 'ghi', 'Gohir.A09G098500' => 'ghi', 'Gohir.A09G124500' => 'ghi', 'Gohir.A11G254100' => 'ghi', 'Gohir.A12G003200' => 'ghi', 'Gohir.A13G170500' => 'ghi', 'Gohir.A13G221971' => 'ghi', 'Gohir.D01G186000' => 'ghi', 'Gohir.D05G081200' => 'ghi', 'Gohir.D07G116400' => 'ghi', 'Gohir.D08G023500' => 'ghi', 'Gohir.D08G073200' => 'ghi', 'Gohir.D09G097900' => 'ghi', 'Gohir.D09G121500' => 'ghi', 'Gohir.D11G263900' => 'ghi', 'Gohir.D12G002900' => 'ghi', 'Gohir.D13G176000' => 'ghi', 'Gohir.D13G226000' => 'ghi', 'Gorai.001G124800' => 'gra', 'Gorai.002G229400' => 'gra', 'Gorai.004G018800' => 'gra', 'Gorai.004G077600' => 'gra', 'Gorai.006G114800' => 'gra', 'Gorai.006G139000' => 'gra', 'Gorai.007G283900' => 'gra', 'Gorai.008G002700' => 'gra', 'Gorai.009G082900' => 'gra', 'Gorai.013G201300' => 'gra', 'Gorai.013G256900' => 'gra', 'GSVIVG01001199001' => 'vvi', 'GSVIVG01021831001' => 'vvi', 'GSVIVG01025304001' => 'vvi', 'GSVIVG01033338001' => 'vvi', 'GSVIVG01037558001' => 'vvi', 'HanXRQChr01g0006351' => 'han', 'HanXRQChr01g0008431' => 'han', 'HanXRQChr04g0115311' => 'han', 'HanXRQChr13g0390151' => 'han', 'HanXRQChr13g0390641' => 'han', 'HanXRQChr14g0445871' => 'han', 'HanXRQChr15g0471651' => 'han', 'Haze_04342' => 'cav', 'Haze_04661' => 'cav', 'Haze_19918' => 'cav', 'Haze_23089' => 'cav', 'Haze_23092' => 'cav', 'Haze_23093' => 'cav', 'Haze_23311' => 'cav', 'Haze_27146' => 'cav', 'Haze_27560' => 'cav', 'Hma1.2p1_0101F.1_g049320' => 'hma', 'Hma1.2p1_0621F.1_g190600' => 'hma', 'Hma1.2p1_0793F.1_g218590' => 'hma', 'Hma1.2p1_1995F.1_g310330' => 'hma', 'HPP92_015772' => 'vpl', 'HPP92_015773' => 'vpl', 'HPP92_017649' => 'vpl', 'HPP92_027463' => 'vpl', 'Hund02857' => 'sun', 'Hund06959' => 'sun', 'Hund07533' => 'sun', 'Hund09526' => 'sun', 'Hund09530' => 'sun', 'Hund09532' => 'sun', 'Hund09534' => 'sun', 'Hund09543' => 'sun', 'Hund18793' => 'sun', 'Hund18978' => 'sun', 'Hund19170' => 'sun', 'Hund20943' => 'sun', 'Hund24748' => 'sun', 'Hund31402' => 'sun', 'Lalb_Chr01g0004991' => 'lal', 'Lalb_Chr01g0020031' => 'lal', 'Lalb_Chr01g0020041' => 'lal', 'Lalb_Chr02g0148731' => 'lal', 'Lalb_Chr02g0148741' => 'lal', 'Lalb_Chr03g0028361' => 'lal', 'Lalb_Chr15g0076851' => 'lal', 'Lalb_Chr18g0045011' => 'lal', 'Lalb_Chr20g0110931' => 'lal', 'Lalb_Chr21g0310941' => 'lal', 'Lalb_Chr21g0310951' => 'lal', 'Lalb_Chr25g0287481' => 'lal', 'Lj1A265G35' => 'lonja', 'Lj1g0002050' => 'lja', 'Lj1g0006744' => 'lja', 'Lj1g0022537' => 'lja', 'Lj2A1167T97' => 'lonja', 'Lj3g0001271' => 'lja', 'Lj3g0012101' => 'lja', 'Lj5g0001138' => 'lja', 'Lj5g0010876' => 'lja', 'Lj5g0022925' => 'lja', 'Lj7C597T25' => 'lonja', 'Lj9A665T31' => 'lonja', 'Lsat_1_v5_gn_2_66741' => 'lsa', 'Lsat_1_v5_gn_5_163821' => 'lsa', 'Lsat_1_v5_gn_5_185861' => 'lsa', 'Lsat_1_v5_gn_5_65220' => 'lsa', 'Lsat_1_v5_gn_8_57100' => 'lsa', 'Manes.01G204800' => 'mes', 'Manes.04G000200' => 'mes', 'Manes.05G080500' => 'mes', 'Manes.06G166700' => 'mes', 'Manes.08G047800' => 'mes', 'Manes.08G086033' => 'mes', 'Manes.08G132600' => 'mes', 'Manes.09G029900' => 'mes', 'Manes.09G154500' => 'mes', 'Manes.15G191820' => 'mes', 'Mapoly0027s0176' => 'mpo', 'Mapoly2005s0001' => 'mpo', 'MBI01_g27618_MAGBIO' => 'mbi', 'MBI09_g40773_MAGBIO' => 'mbi', 'MBI11_g00135_MAGBIO' => 'mbi', 'MBI11_g29746_MAGBIO' => 'mbi', 'MBI11_g35026_MAGBIO' => 'mbi', 'MBI15_g02237_MAGBIO' => 'mbi', 'MBI16_g09821_MAGBIO' => 'mbi', 'MBI17_g00901_MAGBIO' => 'mbi', 'MBI17_g19807_MAGBIO' => 'mbi', 'MBI18_g27883_MAGBIO' => 'mbi', 'MCO01G094' => 'mco', 'MCO04G142' => 'mco', 'MCO05G326' => 'mco', 'MCO05G421' => 'mco', 'MCO07G008' => 'mco', 'MCO07G706' => 'mco', 'MCO09G153' => 'mco', 'MCO09G699' => 'mco', 'MCO11G942' => 'mco', 'MCO13G494' => 'mco', 'MCO14G397' => 'mco', 'MD00G1129100' => 'mdo', 'MD03G1153600' => 'mdo', 'MD03G1259500' => 'mdo', 'MD03G1259600' => 'mdo', 'MD04G1222000' => 'mdo', 'MD11G1280100' => 'mdo', 'MD12G1065800' => 'mdo', 'MD12G1238200' => 'mdo', 'MD14G1065800' => 'mdo', 'Medtr1g052115' => 'mtr', 'Medtr1g071480' => 'mtr', 'Medtr1g081000' => 'mtr', 'Medtr2g087090' => 'mtr', 'Medtr4g051648' => 'mtr', 'Medtr7g092360' => 'mtr', 'Medtr7g095450' => 'mtr', 'MELO3C004367.2' => 'cme', 'MELO3C009063.2' => 'cme', 'MELO3C014518.2' => 'cme', 'MELO3C015799.2' => 'cme', 'Migut.B01078' => 'egut', 'Migut.D00337' => 'egut', 'Migut.D00579' => 'egut', 'Migut.H00769' => 'egut', 'Migut.J01790' => 'egut', 'Migut.K00067' => 'egut', 'Migut.N02459' => 'egut', 'MSTRG.10827' => 'ama', 'MSTRG.17583' => 'ama', 'MSTRG.17684' => 'ama', 'MSTRG.18258' => 'ama', 'MSTRG.18412' => 'ama', 'MSTRG.20442' => 'ama', 'MSTRG.21532' => 'ama', 'MSTRG.26105' => 'ama', 'MSTRG.28028' => 'ama', 'MSTRG.6455' => 'ama', 'Nitab4.5_0000157g0080' => 'nta', 'Nitab4.5_0000158g0120' => 'nta', 'Nitab4.5_0000252g0150' => 'nta', 'Nitab4.5_0000452g0100' => 'nta', 'Nitab4.5_0000678g0040' => 'nta', 'Nitab4.5_0001347g0070' => 'nta', 'Nitab4.5_0001504g0030' => 'nta', 'Nitab4.5_0002766g0080' => 'nta', 'Nitab4.5_0002766g0110' => 'nta', 'Nitab4.5_0003074g0020' => 'nta', 'Nitab4.5_0004063g0020' => 'nta', 'Nitab4.5_0004469g0100' => 'nta', 'Nitab4.5_0004806g0050' => 'nta', 'Nitab4.5_0005363g0010' => 'nta', 'Nitab4.5_0005582g0080' => 'nta', 'Nitab4.5_0008868g0030' => 'nta', 'Nn1g02417' => 'nnu', 'Nn2g14289' => 'nnu', 'Nn2g15422' => 'nnu', 'Nn6g34146' => 'nnu', 'Nn6g34707' => 'nnu', 'Nn7g36177' => 'nnu', 'Oeu001034.2' => 'oeu', 'Oeu002687.1' => 'oeu', 'Oeu005308.1' => 'oeu', 'Oeu008123.1' => 'oeu', 'Oeu015674.3' => 'oeu', 'Oeu025762.1' => 'oeu', 'Oeu026337.1' => 'oeu', 'Oeu027029.1' => 'oeu', 'Oeu031458.2' => 'oeu', 'Oeu038429.1' => 'oeu', 'Oeu043300.3' => 'oeu', 'Oeu048841.1' => 'oeu', 'Os01g0864700' => 'osa', 'Os02g0590800' => 'osa', 'Os03g0636800' => 'osa', 'Os05g0440800' => 'osa', 'Os07g0176600' => 'osa', 'Os07g0676400' => 'osa', 'Os12g0604700' => 'osa', 'Peaxi162Scf00029g03217' => 'pax', 'Peaxi162Scf00189g00525' => 'pax', 'Peaxi162Scf00230g00717' => 'pax', 'Peaxi162Scf00345g00816' => 'pax', 'Peaxi162Scf00406g00614' => 'pax', 'Peaxi162Scf00429g00625' => 'pax', 'Peaxi162Scf01150g00021' => 'pax', 'PGR004G0104' => 'pgr', 'PGR004G2351' => 'pgr', 'PGR044G0846' => 'pgr', 'PGR047G0005' => 'pgr', 'PGR102G1828' => 'pgr', 'PGR119G2358' => 'pgr', 'PGSC0003DMG400013590' => 'stu', 'PGSC0003DMG400014730' => 'stu', 'PGSC0003DMG400019350' => 'stu', 'PGSC0003DMG400033929' => 'stu', 'PGSC0003DMG401002977' => 'stu', 'PGSC0003DMG401023679' => 'stu', 'PGSC0003DMG401026585' => 'stu', 'PGSC0003DMG402002977' => 'stu', 'Phvul.001G137000' => 'pvu', 'Phvul.001G154300' => 'pvu', 'Phvul.005G120700' => 'pvu', 'Phvul.006G100400' => 'pvu', 'Phvul.007G174200' => 'pvu', 'Phvul.007G186800' => 'pvu', 'Phvul.007G255900' => 'pvu', 'Phvul.011G098200' => 'pvu', 'Potri.001G018700' => 'ptr', 'Potri.001G218100' => 'ptr', 'Potri.002G049400' => 'ptr', 'Potri.003G205400' => 'ptr', 'Potri.005G051600' => 'ptr', 'Potri.006G056300' => 'ptr', 'Potri.009G020100' => 'ptr', 'Potri.013G039000' => 'ptr', 'Potri.016G051900' => 'ptr', 'Pp3c2_28480' => 'ppa', 'PRCOL_00001593' => 'pco', 'PRCOL_00002152' => 'pco', 'PRCOL_00002403' => 'pco', 'PRCOL_00002984' => 'pco', 'PRCOL_00003928' => 'pco', 'PRCOL_00004427' => 'pco', 'PRCOL_00006072' => 'pco', 'PRCOL_00006618' => 'pco', 'Prupe.6G142700' => 'ppe', 'Prupe.6G341100' => 'ppe', 'Prupe.7G068700' => 'ppe', 'Prupe.8G236000' => 'ppe', 'Psat0s2723g0080' => 'psa', 'Psat0s3143g0040' => 'psa', 'Psat0s499g0080' => 'psa', 'Psat0s6346g0040' => 'psa', 'Psat1g053120' => 'psa', 'Psat2g087360' => 'psa', 'Psat2g135040' => 'psa', 'Psat3g062320' => 'psa', 'Psat3g071040' => 'psa', 'Psat5g186080' => 'psa', 'Psat5g260480' => 'psa', 'Psat5g262600' => 'psa', 'Psat6g059320' => 'psa', 'Psat6g090920' => 'psa', 'Psat6g119000' => 'psa', 'Psat6g119040' => 'psa', 'Psat6g146600' => 'psa', 'Psat7g186200' => 'psa', 'PSO210G2941' => 'pso', 'PSO339G6606' => 'pso', 'PSO384G1117' => 'pso', 'PSO384G4854' => 'pso', 'PSO782G1555' => 'pso', 'PSO832G1091' => 'pso', 'QL01p005282' => 'qlo', 'QL01p011193' => 'qlo', 'QL03p024954' => 'qlo', 'QL07p021913' => 'qlo', 'QL12p020419' => 'qlo', 'QL12p020431' => 'qlo', 'RcHm_v2.0_Chr3g0451761' => 'rch', 'RcHm_v2.0_Chr3g0466881' => 'rch', 'RcHm_v2.0_Chr3g0480931' => 'rch', 'RcHm_v2.0_Chr5g0048101' => 'rch', 'RcHm_v2.0_Chr6g0267291' => 'rch', 'RcHm_v2.0_Chr6g0290241' => 'rch', 'RcHm_v2.0_Chr7g0178391' => 'rch', 'RcHm_v2.0_Chr7g0212351' => 'rch', 'Rhsim01G0201800' => 'rsi', 'Rhsim01G0272500' => 'rsi', 'Rhsim03G0011700' => 'rsi', 'Rhsim05G0161000' => 'rsi', 'Rhsim13G0223900' => 'rsi', 'Sabra01G0013300' => 'sbr', 'Sabra02G0040200' => 'sbr', 'Sabra05G0045400' => 'sbr', 'Sabra06G0039800' => 'sbr', 'Sabra09G0012200' => 'sbr', 'Sabra13G0036400' => 'sbr', 'Sabra16G0055500' => 'sbr', 'Sabra16G0126000' => 'sbr', 'Sabra18G0051200' => 'sbr', 'Sabra18G0051500' => 'sbr', 'SalBow1G8417' => 'sbo', 'SalBow3G0844' => 'sbo', 'SalBow3G2156' => 'sbo', 'SalBow4G1099' => 'sbo', 'SalBow4G2528' => 'sbo', 'SalBow6G3513' => 'sbo', 'SalBow8G5125' => 'sbo', 'Sc05g0001230' => 'sci', 'Sc12g0004860' => 'sci', 'Sc16g0011580' => 'sci', 'Sc19g0006820' => 'sci', 'Sc19g0006830' => 'sci', 'Sc19g0006840' => 'sci', 'Sc19g0006850' => 'sci', 'Sc20g0000290' => 'sci', 'Sed0000317' => 'sed', 'Sed0001475' => 'sed', 'Sed0003875' => 'sed', 'Sed0009843' => 'sed', 'Sed0010581' => 'sed', 'Sed0010897' => 'sed', 'Sed0013343' => 'sed', 'SEGI_14405' => 'sgi', 'SEGI_22905' => 'sgi', 'SEGI_32571' => 'sgi', 'SGA_v2.0_scaffold105G30456' => 'sas', 'SGA_v2.0_scaffold138G35306' => 'sas', 'SGA_v2.0_scaffold1G00523' => 'sas', 'SGA_v2.0_scaffold247G44852' => 'sas', 'SGA_v2.0_scaffold295G47488' => 'sas', 'SGA_v2.0_scaffold637G53305' => 'sas', 'SGA_v2.0_scaffold94G28450' => 'sas', 'SHI18379' => 'shi', 'SMO167G0059' => 'smo', 'SMO335G0005' => 'smo', 'SMO335G0022' => 'smo', 'SMO347G0298' => 'smo', 'SMO347G0304' => 'smo', 'Solyc01g009300.3' => 'sly', 'Solyc01g097500.4' => 'sly', 'Solyc03g059250.3' => 'sly', 'Solyc09g065570.4' => 'sly', 'Solyc10g080390.2' => 'sly', 'Solyc11g061960.2' => 'sly', 'Solyc11g071970.2' => 'sly', 'Solyc11g150140.1' => 'sly', 'Sopen00g008530' => 'spe', 'Sopen01g004790' => 'spe', 'Sopen01g041160' => 'spe', 'Sopen03g013600' => 'spe', 'Sopen09g027320' => 'spe', 'Sopen10g030930' => 'spe', 'Sopen11g023760' => 'spe', 'Sopen11g029640' => 'spe', 'Sp2g20220' => 'spa', 'Sp3g03640' => 'spa', 'Sp3g10430' => 'spa', 'Sp3g18880' => 'spa', 'Sp5g00250' => 'spa', 'Sp5g17110' => 'spa', 'SpUn0001_0700' => 'spa', 'TAR362G0933' => 'tar', 'TAR369G0947' => 'tar', 'TAR623G1326' => 'tar', 'TAR623G1363' => 'tar', 'TAR633G1268' => 'tar', 'TAR633G1692' => 'tar', 'TAR633G1849' => 'tar', 'TAR636G3338' => 'tar', 'THA.LOC104799564' => 'tha', 'THA.LOC104801986' => 'tha', 'THA.LOC104802236' => 'tha', 'THA.LOC104803073' => 'tha', 'THA.LOC104817900' => 'tha', 'THA.LOC104819141' => 'tha', 'THA.LOC104821679' => 'tha', 'THA.LOC104823428' => 'tha', 'THA.LOC104823754' => 'tha', 'Thecc.01G273100' => 'tca', 'Thecc.05G164400' => 'tca', 'Thecc.05G287100' => 'tca', 'Thecc.09G228100' => 'tca', 'Thecc.09G274200' => 'tca', 'Thhalv10003908m.g' => 'esa', 'Thhalv10005864m.g' => 'esa', 'Thhalv10010103m.g' => 'esa', 'Thhalv10020328m.g' => 'esa', 'Thhalv10020364m.g' => 'esa', 'Thhalv10020784m.g' => 'esa', 'TPR.G19093' => 'tpr', 'TPR.G21247' => 'tpr', 'TPR.G22007' => 'tpr', 'TPR.G22786' => 'tpr', 'TPR.G25692' => 'tpr', 'TPR.G3887' => 'tpr', 'TPR.G4651' => 'tpr', 'TPR.G557' => 'tpr', 'TWI12G0373' => 'twi', 'TWI12G0507' => 'twi', 'TWI12G0659' => 'twi', 'TWI31G0721' => 'twi', 'TWI31G1392' => 'twi', 'TWI60G1577' => 'twi', 'TWI75G1307' => 'twi', 'TWI77G0208' => 'twi', 'TWI79G1134' => 'twi', 'unitig_0.g1135' => 'ugi', 'unitig_26.g9500' => 'ugi', 'unitig_27.g25123' => 'ugi', 'unitig_61.g26266' => 'ugi', 'unitig_699.g19455' => 'ugi', 'unitig_736.g22291' => 'ugi', 'unitig_748.g7238' => 'ugi', 'vmacro04185' => 'vma', 'vmacro07871' => 'vma', 'vmacro14325' => 'vma', 'vmacro14902' => 'vma', 'vmacro19687' => 'vma', 'vmacro19688' => 'vma', 'VMungo0540G0674' => 'vmu', 'VMungo0647G0501' => 'vmu', 'VMungo0720G1947' => 'vmu', 'VMungo0720G2775' => 'vmu', 'VMungo0720G3145' => 'vmu', 'VMungo1080G1792' => 'vmu', 'VMungo1127G0334' => 'vmu', 'VMungo1383G1315' => 'vmu', 'VMungo1383G3112' => 'vmu', 'Zm00001eb031270' => 'zma', 'Zm00001eb135710' => 'zma', 'Zm00001eb146890' => 'zma', 'Zm00001eb186110' => 'zma', 'Zm00001eb218810' => 'zma', 'Zm00001eb241020' => 'zma', 'Zm00001eb245690' => 'zma', 'Zm00001eb288850' => 'zma', 'Zm00001eb301200' => 'zma' ) $gf_id = 'HOM05D000738' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000738' ) $data_identifier = 'HOM05D000738' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 14, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 10, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 15, 'csa' => (int) 4, 'camsi' => (int) 15, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 14, 'lal' => (int) 12, 'lonja' => (int) 4, 'lja' => (int) 8, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 11, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 10, 'nta' => (int) 16, 'nnu' => (int) 6, 'oeu' => (int) 12, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 1, 'pco' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 18, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb301200' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1